Snakeparse

Author:Nils Homer
Date:Apr 19, 2018
Version:0.1.1-dev

Making Snakemake workflows into full-fledged command line tools since 1999.

Why Snakeparse?

  • I wanted a single command line utility that could organize and execute multiple Snakemake workflows
  • I wanted to have my workflow-specific arguments be parsed on the command line (ex. with argparse)
  • I wanted an API or library to configure how to group and organize the workflows, and how to display them on the command line.
  • I didn’t want to write this library more than once.

Demo

_images/snakeparse-demo.gif

Installation

To install the latest release, type:

git clone https://github.com/nh13/snakeparse.git
python setup.py install

See the Installation notes for details.

Indices and tables

Contents:

References

See also

Snakemake
http://snakemake.readthedocs.io
The python language
http://www.python.org