Installation

Python 3.6 or higher is required.

Snakemake 4.4.0 or higher is required.

To clone the repository: git clone https://github.com/nh13/snakeparse.git.

To install locally: python setup.py install.

The command line utility can be run with snakeparse

Conda Recipe

See the conda-recipe on Bioconda.

Testing

To run tests, run coverage run -m unittest discover -s src

To obtain test coverage, run codecov.