Snakeparse¶
Author: | Nils Homer |
---|---|
Date: | Mar 11, 2018 |
Version: | 0.0.1 |
Making Snakemake workflows into full-fledged command line tools since 1999.
Documentation Contents¶
Why Snakeparse?¶
- I wanted a single command line utility that could organize and execute multiple Snakemake workflows
- I wanted to have my workflow-specific arguments be parsed on the command line (ex. with argparse)
- I wanted an API or library to configure how to group and organize the workflows, and how to display them on the command line.
- I didn’t want to write this library more than once.
Demo¶
Installation¶
To install the latest release, type:
git clone https://github.com/nh13/snakeparse.git
python setup.py install
See the Installation notes for details.
References¶
See also
- Snakemake
- http://snakemake.readthedocs.io
- The python language
- http://www.python.org